How To Install "roary" Package on Ubuntu
Quick Install Instructions of roary on Ubuntu Server. It’s Super Easy! simply click on Copy button to copy the command and paste into your command line terminal using built-in APT package manager.
See below for quick step by step instructions of SSH commands, Copy/Paste to avoid miss-spelling or accidently installing a different package.
See below for quick step by step instructions of SSH commands, Copy/Paste to avoid miss-spelling or accidently installing a different package.
Quick Install Steps:
Step 1
sudo apt-get update -y
Step 2
sudo apt-get install -y roary
Step 3
Check the system logs to confirm that there are no related errors.
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see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.
see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.
Execute the commands above step by step.
You can simply hit the copy button to copy the command and paste into the command line interface.
Note: -y flag means to assume yes and silently install, without asking you questions in most cases.
Note: -y flag means to assume yes and silently install, without asking you questions in most cases.
high speed stand alone pan genome pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes. high speed stand alone pan genome pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes.
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes. high speed stand alone pan genome pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes.
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Detailed Instructions:
Step 1
Run update command to update package repositories and get latest package information.
sudo apt-get update -y
Step 2
Run the install command with -y flag to quickly install the packages and dependencies.
sudo apt-get install -y roary
Step 3
Check the system logs to confirm that there are no related errors.
You can use
ZoomAdmin
to check the logs, manager servers, host multiple websites and apps on your servers and more. The apps run in docker containers, to learn more
see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.
see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.