How To Install "fastml" Package on Ubuntu
Quick Install Instructions of fastml on Ubuntu Server. It’s Super Easy! simply click on Copy button to copy the command and paste into your command line terminal using built-in APT package manager.
See below for quick step by step instructions of SSH commands, Copy/Paste to avoid miss-spelling or accidently installing a different package.
See below for quick step by step instructions of SSH commands, Copy/Paste to avoid miss-spelling or accidently installing a different package.
Quick Install Steps:
Step 1
sudo apt-get update -y
Step 2
sudo apt-get install -y fastml
Step 3
Check the system logs to confirm that there are no related errors.
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see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.
Execute the commands above step by step.
You can simply hit the copy button to copy the command and paste into the command line interface.
Note: -y flag means to assume yes and silently install, without asking you questions in most cases.
Note: -y flag means to assume yes and silently install, without asking you questions in most cases.
maximum likelihood ancestral amino-acid sequence reconstruction
FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. FastML runs several algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. For character reconstruction the previously described FastML algorithms are used to efficiently infer the most likely ancestral sequences for each internal node of the tree. Both joint and the marginal reconstructions are provided. For indels reconstruction the sequences are first coded according to the indel events detected within the multiple sequence alignment (MSA) and then a state-of-the-art likelihood model is used to reconstruct ancestral indels states. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences). maximum likelihood ancestral amino-acid sequence reconstruction
FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. FastML runs several algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. For character reconstruction the previously described FastML algorithms are used to efficiently infer the most likely ancestral sequences for each internal node of the tree. Both joint and the marginal reconstructions are provided. For indels reconstruction the sequences are first coded according to the indel events detected within the multiple sequence alignment (MSA) and then a state-of-the-art likelihood model is used to reconstruct ancestral indels states. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences).
FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. FastML runs several algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. For character reconstruction the previously described FastML algorithms are used to efficiently infer the most likely ancestral sequences for each internal node of the tree. Both joint and the marginal reconstructions are provided. For indels reconstruction the sequences are first coded according to the indel events detected within the multiple sequence alignment (MSA) and then a state-of-the-art likelihood model is used to reconstruct ancestral indels states. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences). maximum likelihood ancestral amino-acid sequence reconstruction
FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. FastML runs several algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. For character reconstruction the previously described FastML algorithms are used to efficiently infer the most likely ancestral sequences for each internal node of the tree. Both joint and the marginal reconstructions are provided. For indels reconstruction the sequences are first coded according to the indel events detected within the multiple sequence alignment (MSA) and then a state-of-the-art likelihood model is used to reconstruct ancestral indels states. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences).
Detailed Instructions:
Step 1
Run update command to update package repositories and get latest package information.
sudo apt-get update -y
Step 2
Run the install command with -y flag to quickly install the packages and dependencies.
sudo apt-get install -y fastml
Step 3
Check the system logs to confirm that there are no related errors.
You can use
ZoomAdmin
to check the logs, manager servers, host multiple websites and apps on your servers and more. The apps run in docker containers, to learn more
see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.
see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.