How To Install "spaced" Package on Ubuntu

Quick Install Instructions of spaced on Ubuntu Server. It’s Super Easy! simply click on Copy button to copy the command and paste into your command line terminal using built-in APT package manager.

See below for quick step by step instructions of SSH commands, Copy/Paste to avoid miss-spelling or accidently installing a different package.


Quick Install Steps:
Step 1
sudo apt-get update -y
Step 2
sudo apt-get install -y spaced
Step 3
Check the system logs to confirm that there are no related errors. You can use ZoomAdmin to check the logs, manager servers, host multiple websites and apps on your servers and more. The apps run in docker containers, to learn more
see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.
Execute the commands above step by step. You can simply hit the copy button to copy the command and paste into the command line interface.
Note: -y flag means to assume yes and silently install, without asking you questions in most cases.

alignment-free sequence comparison using spaced words
Spaced (Words) is a new approach to alignment-free sequence comparison. While most alignment-free algorithms compare the word-composition of sequences, spaced uses a pattern of care and don't care positions. The occurrence of a spaced word in a sequence is then defined by the characters at the match positions only, while the characters at the don't care positions are ignored. Instead of comparing the frequencies of contiguous words in the input sequences, this new approach compares the frequencies of the spaced words according to the pre-defined pattern. An information-theoretic distance measure is then used to define pairwise distances on the set of input sequences based on their spaced-word frequencies. Systematic test runs on real and simulated sequence sets have shown that, for phylogeny reconstruction, this multiple-spaced-words approach is far superior to the classical alignment-free approach based on contiguous word frequencies. alignment-free sequence comparison using spaced words
Spaced (Words) is a new approach to alignment-free sequence comparison. While most alignment-free algorithms compare the word-composition of sequences, spaced uses a pattern of care and don't care positions. The occurrence of a spaced word in a sequence is then defined by the characters at the match positions only, while the characters at the don't care positions are ignored. Instead of comparing the frequencies of contiguous words in the input sequences, this new approach compares the frequencies of the spaced words according to the pre-defined pattern. An information-theoretic distance measure is then used to define pairwise distances on the set of input sequences based on their spaced-word frequencies. Systematic test runs on real and simulated sequence sets have shown that, for phylogeny reconstruction, this multiple-spaced-words approach is far superior to the classical alignment-free approach based on contiguous word frequencies.

Detailed Instructions:
Step 1
Run update command to update package repositories and get latest package information.
sudo apt-get update -y
Step 2
Run the install command with -y flag to quickly install the packages and dependencies.
sudo apt-get install -y spaced
Step 3
Check the system logs to confirm that there are no related errors. You can use ZoomAdmin to check the logs, manager servers, host multiple websites and apps on your servers and more. The apps run in docker containers, to learn more
see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.