How To Install "hisat2" Package on Ubuntu
Quick Install Instructions of hisat2 on Ubuntu Server. It’s Super Easy! simply click on Copy button to copy the command and paste into your command line terminal using built-in APT package manager.
See below for quick step by step instructions of SSH commands, Copy/Paste to avoid miss-spelling or accidently installing a different package.
See below for quick step by step instructions of SSH commands, Copy/Paste to avoid miss-spelling or accidently installing a different package.
Quick Install Steps:
Step 1
sudo apt-get update -y
Step 2
sudo apt-get install -y hisat2
Step 3
Check the system logs to confirm that there are no related errors.
You can use
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to check the logs, manager servers, host multiple websites and apps on your servers and more. The apps run in docker containers, to learn more
see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.
see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.
Execute the commands above step by step.
You can simply hit the copy button to copy the command and paste into the command line interface.
Note: -y flag means to assume yes and silently install, without asking you questions in most cases.
Note: -y flag means to assume yes and silently install, without asking you questions in most cases.
graph-based alignment of short nucleotide reads to many genomes
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM). graph-based alignment of short nucleotide reads to many genomes
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM).
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM). graph-based alignment of short nucleotide reads to many genomes
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM).
Detailed Instructions:
Step 1
Run update command to update package repositories and get latest package information.
sudo apt-get update -y
Step 2
Run the install command with -y flag to quickly install the packages and dependencies.
sudo apt-get install -y hisat2
Step 3
Check the system logs to confirm that there are no related errors.
You can use
ZoomAdmin
to check the logs, manager servers, host multiple websites and apps on your servers and more. The apps run in docker containers, to learn more
see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.
see ZoomAdmin Features for list of features and demo videos. And you can start with the Free Plan.